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Create aggregate bioinformatics analysis report across many samples

Project description

MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a number of common tools (FastQC, Bowtie, Picard and many others).

You can install MultiQC from PyPI as follows:

pip install multiqc

Then it’s just a case of going to your analysis directory and running the script:

multiqc .

MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.

The report is created in multiqc_report/multiqc_report.html by default. A zip file of the report is also generated to facilitate easy transfer and sharing.

Tab-delimited data files are created in multiqc_report/report_data/ to give easy access for downstream processing.

For more detailed instructions, run multiqc -h

Project details

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