mutalyzer-hgvs-parser

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Package to syntax check and convert Mutalyzer HGVS variant descriptions into a dictionary model to easily access descriptions information in a programmatically manner.

Features:

Accepts HGVS descriptions with multiple variants (one HGVS allele).
Any description sub-part can be parsed and converted as well.
Supports common deviations to the HGVS guidelines.
Command line and library interfaces available.

Quick start

Parse and convert a description from the command line:

$ mutalyzer_hgvs_parser -c "NG_012337.1:c.20del"
{
  "reference": {
    "id": "NG_012337.1"
  },
  "coordinate_system": "c",
  "variants": [
    {
      "location": {
        "type": "point",
        "position": 20
      },
      "type": "deletion",
      "source": "reference"
    }
  ]
}

The to_model() function can be used for the same purpose:

>>> from mutalyzer_hgvs_parser import to_model
>>> model = to_model("NG_012337.1:c.20del")
>>> model['reference']
{'id': 'NG_012337.1'}

Please see ReadTheDocs for the latest documentation.

Release files for mutalyzer-hgvs-parser 0.4.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for mutalyzer-hgvs-parser 0.4.0
File	Size	Uploaded
mutalyzer_hgvs_parser-0.4.0.tar.gz	26.5 kB	Apr 13, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for mutalyzer-hgvs-parser 0.4.0
File	Interpreter	ABI	Platform	Reset
mutalyzer_hgvs_parser-0.4.0-py3-none-any.whl 17.4 kB Apr 13, 2026	Python 3	none	any	Details

Total release size: 43.9 kB

Release files / mutalyzer_hgvs_parser-0.4.0.tar.gz

Download URL	mutalyzer_hgvs_parser-0.4.0.tar.gz
Size	26.5 kB
Tags	Source
SHA-256 checksum How to use checksums	`6d7530a047a4f39f1e929bde3920887b6abea58d574b6794e725b5ca53aab71e`
BLAKE2b-256 checksum How to use checksums	`f868082242a7d8bf0535416df0c04a3e96d68bfc863060fe6a889ab4f0b56e87`
Upload date	Apr 13, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.2.0 CPython/3.13.1`

Release files / mutalyzer_hgvs_parser-0.4.0-py3-none-any.whl

Download URL	mutalyzer_hgvs_parser-0.4.0-py3-none-any.whl
Size	17.4 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`231a5456cb8ec94a81b9c1e17ff169f570cb7f1527061d8e9ad26438ce7ea00c`
BLAKE2b-256 checksum How to use checksums	`8c41d0d44aef5f2a96d2474b19ef0dce542baed215fb0e55ce2a8e8877128609`
Upload date	Apr 13, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.2.0 CPython/3.13.1`