Skip to main content

Parser for mwtab files from the Metabolomics Workbench

Project description

License information Current library version Supported Python versions Documentation status

The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

The mwtab package provides facilities to convert mwTab formatted files into their equivalent JSONized (JavaScript Object Notation, an open-standard format that uses human-readable text to transmit data objects consisting of attribute-value pairs) representation and vice versa.

The mwtab package can be used in several ways:

  • As a library for accessing and manipulating data stored in mwTab format files.

  • As a command-line tool to convert between mwTab format and its equivalent JSON representation.

Installation

The mwtab package runs under Python 2.7 and Python 3.4+, use pip to install. Starting with Python 3.4, pip is included by default.

Install on Linux, Mac OS X

python3 -m pip install mwtab

Install on Windows

py -3 -m pip install mwtab

Upgrade on Linux, Mac OS X

python3 -m pip install mwtab --upgrade

Upgrade on Windows

py -3 -m pip install mwtab --upgrade

Quickstart

>>> import mwtab
>>>
>>> for mwfile in mwtab.read_files("1", "2"):  # Here we use ANALYSIS_ID of file to fetch data from URL
...      print("STUDY_ID:", mwfile.study_id)
...      print("ANALYSIS_ID:", mwfile.analysis_id)
...      print("SOURCE:", mwfile.source)
...      print("Blocks:", list(mwfile.keys()))
>>>

License

This package is distributed under the BSD license.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

mwtab-0.1.2.tar.gz (38.7 kB view details)

Uploaded Source

File details

Details for the file mwtab-0.1.2.tar.gz.

File metadata

  • Download URL: mwtab-0.1.2.tar.gz
  • Upload date:
  • Size: 38.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for mwtab-0.1.2.tar.gz
Algorithm Hash digest
SHA256 aef9a391c6c3cdd80e6e60a0d7eaa1491b23b93e07fa594460e567183b0f24c7
MD5 1b70f8b881585af08c39dee6bda1cdf0
BLAKE2b-256 1ff2482536ea02be36a3612b353e5e903c4cb64c39f747b9498a1d6f2fe4dbb5

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page