Skip to main content

[![Build Status](https://travis-ci.org/jerkos/mzOS.svg?branch=master)](https://travis-ci.org/jerkos/mzOS) [![Coverage Status](https://coveralls.io/repos/jerkos/mzOS/badge.svg?branch=master&service=github)](https://coveralls.io/github/jerkos/mzOS?branch=master) [![Code Issues](https://www.quantifiedcode.com/api/v1/project/f458ff06e0bd4eb8b2b98cee0dab6ecb/badge.svg)](https://www.quantifiedcode.com/app/project/f458ff06e0bd4eb8b2b98cee0dab6ecb)

## Small library for features annotations in LC-MS metabolomics experiments:

  • [x] isotopes detection

  • [x] adducts/fragments annotation using simple heuristics (when conflicts)

  • [x] database search (HMDB, LMSD) from local sqlite file (fast)

  • [x] database assignment scoring based on predicted isotopic distribution and bayesian algorithm.

  • [ ] functionnal annotation, metabolite pathway enrichment analysis (MPEA)

More details [here](http://jerkos.github.io/mzOS)

## Dependancies

  • numpy

  • scipy

  • scikit-learn

  • pandas

## TODOs:

  • documentation

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

mzOS-0.1.3.zip (23.8 MB view details)

Uploaded Source

File details

Details for the file mzOS-0.1.3.zip.

File metadata

  • Download URL: mzOS-0.1.3.zip
  • Upload date:
  • Size: 23.8 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for mzOS-0.1.3.zip
Algorithm Hash digest
SHA256 1c413484decb47da7774ac5d81ba2e42132f4386699da757c63b84e286966ea7
MD5 be96d4ff19cd7eb9100093b34884b88a
BLAKE2b-256 20dcdf3ea24cd563f4aa396bd573bbfe2b28e9c5f8fefb4d3b0f8094b6193f02

See more details on using hashes here.

Release history Release notifications | RSS feed

This release

0.1.3 This release

1 file

0.1.2

1 file

0.1.1

2 files

0.1

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page