National Phenome Centre toolbox
Project description
Toolbox for preprocessing of metabolic profiling datasets
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The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.
Documentation can be found on `Read the Docs <http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest>`_.
Imports
- Peak-picked LC-MS data (XCMS, Progenesis QI, *&* Metaboscape)
- Raw NMR spectra (Bruker format)
- Targeted datasets (TargetLynx, Bruker BI-LISA, *&* BI-Quant-Ur)
Provides
- Batch *&* drift correction for LC-MS datasets
- Feature filtering by RSD *&* linearity of response
- Calculation of spectral line-width in NMR
- PCA of datasets
- Visualisation of datasets
Exports
- Basic tabular csv
- `ISA-TAB <http://isa-tools.org>`_
The nPYc toolbox is `developed <https://github.com/phenomecentre/npyc-toolbox>`_ by the informatics team at `The National Phenome Centre <http://phenomecentre.org/>`_ at `Imperial College London <http://imperial.ac.uk/>`_.
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