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National Phenome Centre toolbox

Project description

Travis CI build status Documentation Status Test coverage

The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.

Documentation can be found on Read the Docs.

  • Peak-picked LC-MS data (XCMS, Progenesis QI, & Metaboscape)
  • Raw NMR spectra (Bruker format)
  • Targeted datasets (TargetLynx, Bruker BI-LISA, & BI-Quant-Ur)
  • Batch & drift correction for LC-MS datasets
  • Feature filtering by RSD & linearity of response
  • Calculation of spectral line-width in NMR
  • PCA of datasets
  • Visualisation of datasets

The nPYc toolbox is developed by the informatics team at The National Phenome Centre at Imperial College London.

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Files for nPYc, version 1.2.3
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