National Phenome Centre toolbox
Project description
The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.
Documentation can be found on Read the Docs.
- Imports
Peak-picked LC-MS data (XCMS, Progenesis QI, & Metaboscape)
Raw NMR spectra (Bruker format)
Targeted datasets (TargetLynx, Bruker BI-LISA, & BI-Quant-Ur)
- Provides
Batch & drift correction for LC-MS datasets
Feature filtering by RSD & linearity of response
Calculation of spectral line-width in NMR
PCA of datasets
Visualisation of datasets
- Exports
Basic tabular csv
The nPYc toolbox is developed by the informatics team at The National Phenome Centre at Imperial College London.
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