National Phenome Centre toolbox
Project description
Toolbox for preprocessing of metabolic profiling datasets
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The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.
Documentation can be found on Read the Docs <http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest>
_.
Imports
- Peak-picked LC-MS data (XCMS, Progenesis QI, & Metaboscape)
- Raw NMR spectra (Bruker format)
- Targeted datasets (TargetLynx, Bruker BI-LISA, & BI-Quant-Ur)
Provides
- Batch & drift correction for LC-MS datasets
- Feature filtering by RSD & linearity of response
- Calculation of spectral line-width in NMR
- PCA of datasets
- Visualisation of datasets
Exports
- Basic tabular csv
ISA-TAB <http://isa-tools.org>
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The nPYc toolbox is developed <https://github.com/phenomecentre/npyc-toolbox>
_ by the informatics team at The National Phenome Centre <http://phenomecentre.org/>
_ at Imperial College London <http://imperial.ac.uk/>
_.
Project details
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