nanoQC 0.7.1

Create fastQC-like plots for Oxford Nanopore sequencing data

# nanoQC
Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC.

[](https://twitter.com/wouter_decoster)
[](https://anaconda.org/bioconda/nanoqc)


Creates dynamic plots using [bokeh](https://bokeh.pydata.org/en/latest/).
For an example see [here](http://decoster.xyz/wouter/)


## INSTALLATION
```bash
pip install nanoQC
```
or
[](https://anaconda.org/bioconda/nanoqc)
```
conda install -c bioconda nanoqc
```


## USAGE
```
nanoQC [-h] [-v] [-o OUTDIR] fastq

positional arguments:
fastq Reads data in fastq.gz format.

optional arguments:
-h, --help show this help message and exit
-v, --version Print version and exit.
-o, --outdir OUTDIR Specify directory in which output has to be created.
```

## STATUS
[](https://landscape.io/github/wdecoster/nanoQC/master)

## CITATION
If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).