Skip to main content

A few simple math function for other Oxford Nanopore processing scripts

Project description

This module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data

This includes the following functions:
* Calculate read N50 from a set of lengths getN50(readlenghts)
* Remove extreme length outliers from a dataset removeLengthOutliers(dataframe, columname)
* Calculate the average Phred quality of a read aveQual(qualscores)
* Write out the statistics report after calling readstats function writeStats(dataframe, outputname)
* Compute a number of statistics, return a dictionary readstats(dataframe)

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for nanomath, version 0.12.4
Filename, size File type Python version Upload date Hashes
Filename, size nanomath-0.12.4.tar.gz (3.0 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page