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A few simple math function for other Oxford Nanopore processing scripts

Project description

This module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data

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  • Calculate read N50 from a set of lengths getN50(readlenghts)
  • Remove extreme length outliers from a dataset removeLengthOutliers(dataframe, columname)
  • Calculate the average Phred quality of a read aveQual(qualscores)
  • Write out the statistics report after calling readstats function writeStats(dataframe, outputname)
  • Compute a number of statistics, return a dictionary readstats(dataframe)


pip install nanomath
install with conda
conda install -c bioconda nanomath


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