A few simple math function for other Oxford Nanopore processing scripts
Project description
This module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data
FUNCTIONS
- Calculate read N50 from a set of lengths get_N50(readlenghts)
- Remove extreme length outliers from a dataset remove_length_outliers(dataframe, columname)
- Calculate the average Phred quality of a read ave_qual(qualscores)
- Write out the statistics report after calling readstats function write_stats(dataframe, outputname)
- Compute a number of statistics, return a dictionary calc_read_stats(dataframe)
INSTALLATION
pip install nanomath
or
conda install -c bioconda nanomath
STATUS
Release history Release notifications
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| Filename, size nanomath-0.18.0.tar.gz (3.9 kB) | File type Source | Python version None | Upload date | Hashes View hashes |
