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Nanome Plugin to run molecular dynamics simulation on a complex

Project description

Nanome - Molecular Dynamics

Runs a simple molecular dynamics simulation on a complex of the workspace.

Needs a valid installation of OpenMM

Installation

$ pip install nanome-molecular-dynamics

Usage

To start the plugin:

$ nanome-molecular-dynamics -a plugin_server_address

In Nanome:

  • Activate Plugin, its window should open
  • Select complex to use for simulation. Be careful: plugin will modify the complex to prepare it for simulation
  • Click on Start

License

MIT

Project details


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Files for nanome-molecular-dynamics, version 0.1.0
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