This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it’s functions can also be used for other applications.
FUNCTIONS
Check if a specified color is a valid matplotlib color checkvalidColor(color)
Check if a specified output format is valid checkvalidFormat(format)
Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)
Create cumulative yield plot and evaluate read length and quality over time timePlots(df, path, color, format)
Create length distribution histogram and density curve lengthPlots(array, name, path, n50, color, format, log=False)
Create flowcell physical layout in numpy array makeLayout()
Present the activity (number of reads) per channel on the flowcell as a heatmap spatialHeatmap(array, title, path, color, format)
INSTALLATION
pip install nanoplotterconda install -c bioconda nanoplotter
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file nanoplotter-0.33.0.tar.gz.
File metadata
- Download URL: nanoplotter-0.33.0.tar.gz
- Upload date:
- Size: 8.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0d8d6ab46f02d6fa83d4216b47c5d9e4238c3b25bb63294705071cb6ed1eb9dc
|
|
| MD5 |
535575f25183728c18019bc405d83465
|
|
| BLAKE2b-256 |
063d0da3cf2558377afe2addb15b885d6668994f34c1689a85d4ed8c889b1093
|
