Network Analysis of Protein Adaptation (intra-protein residue coevolution network construction and analysis)
The NAPA package performs intra-protein residue coevolution network construction and analysis.
The package supports two input types:
NAPA produces the following outputs:
Please see the documentation on github for complete usage details.
Use pip to install the napa package:
$ pip install napa
NAPA depends on several other packages and these will be installed automatically by pip if they are not already installed.
Note the pip scipy installation can sometimes have issues. If so, alternate methods of installing scipy may be preferable. See scipy install for details. Then rerun pip install napa.