A simple plugin to view .emd files in napari (Velox files)
Project description
napari-EMD
A simple plugin to view .emd files in napari (i.e. Velox files). Allows users to track metadata as it changes over the course of a video/stack, developed for analysis of in-situ microscopy data, where users may be changing magnification, focus, etc. during aquisition.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-EMD
via pip:
`pip install napari-EMD`
You can install napari and access the plugin through the GUI. Reccomended install command for napari:
`python -m pip install "napari[all]"`
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-EMD" is free and open source software
Issues and Requests
If you encounter any problems or would like any functionality added, please file an issue along with a detailed description.
Current maintainer(s): Nicki Shaw
To Do
- Attatch last-opened information, so the widget does not reset when frames are changed and open toggle options are open remain.
- Add a search bar for navigating metadata.
- Output metadata as file option.
- Add note to change order of open files to replacee active metadata view.
- Make Singleframe note update automatically on change of file order.
Project details
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