A plugin to read and write images using bfio within napari
Project description
napari-bfio
A plugin to read and write images using bfio within napari
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-bfio
via pip:
pip install napari-bfio
napari-bfio
depends on bfio
package to read/write the data. By default, bfio
package and the core dependencies (numpy, tifffile, imagecodecs) are installed during the installation process of napari-bfio
.
Additionally, bfio
with other dependencies can be installed:
pip install bfio[bioformats]
- Adds support for BioFormats/Java. See License for additional information.pip install bfio[zarr]
- Adds support for OME Zarrpip install bfio[all]
- Installs all dependencies.
To install latest development version :
pip install git+https://github.com/PolusAI/napari-bfio.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "napari-bfio" is free and open source software
NOTE
Bioformats is licensed under GPL, and as a consequence so is the bioformats_jar
package. These packages and libraries are installed when using the bfio[bioformats]
option.
Issues
If you encounter any problems, please file an issue along with a detailed description.
Project details
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