a sample data plugin for bio-related demos
Project description
napari-bio-sample-data
a sample data plugin for bio-related demos
This plugin contains 5 sample datasets with additional napari layer types:
(1) 3D EM dataset (image + points + vectors)
Image credit: Alister Burt
The original data is down-sampled to have smaller file size.
(2) 2D skin RGB dataset (image + shape)
Image credit: skimage.data.skin
(3) 3D nuclei dataset (image + label + surface)
Image credit: skimage.data.cells3d
(4) 2D timelapse dataset (image + points + tracks)
Image credit: Cell Tracking Challenge
The original data is cropped to have smaller file size.
(5) large multi-resolution 3D EM dataset
Image credit: Janelia Open Organelle
This plugin only accesses 2 lower resolution levels.
Datasets (1)-(4) are stored locally.
Dataset (5) is downloaded and temporarily stored on RAM when accessed.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-bio-sample-data
via pip:
pip install napari-bio-sample-data
To install latest development version :
pip install git+https://github.com/chili-chiu/napari-bio-sample-data.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-bio-sample-data" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file napari-bio-sample-data-0.0.4.tar.gz
.
File metadata
- Download URL: napari-bio-sample-data-0.0.4.tar.gz
- Upload date:
- Size: 20.4 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.9.13
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | f2fae7c76fc4e3383c0b0a1d365fe88ab4908f781d0b8b5af4a12015b90d10be |
|
MD5 | 7ae855fb723b153568d30ed187c6343b |
|
BLAKE2b-256 | eb1d608272c23bd06bd8e741b222a7a172cf009eb1a135e652305a263f39dfaf |
File details
Details for the file napari_bio_sample_data-0.0.4-py3-none-any.whl
.
File metadata
- Download URL: napari_bio_sample_data-0.0.4-py3-none-any.whl
- Upload date:
- Size: 20.3 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.9.13
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6dd5386e5790cba253d9f4ab646ac939fd5a389d04c47b73c06bd2535b18d5f3 |
|
MD5 | 5047763cb1555b3660c9aaf33c568142 |
|
BLAKE2b-256 | c9342b8663d422e2ceac4934b0d31944bb8eaed33009b4ccbeeb0f610b8fb5f8 |