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Visualise brainreg registration output in standard space

Project description

napari-brainreg-standard

License PyPI Python Version tests Development Status codecov Gitter

Visualise brainreg registration output in napari

Based on the napari cookiecutter plugin template and napari-ndtiffs by @tlambert03


Installation

Assuming you already have napari installed, you can install napari-brainreg-standard via pip:

pip install napari-brainreg-standard

Usage

Open napari and drag your brainreg output directory (the one with the log file) onto the napari window.

Various images should then open, including:

  • Image (downsampled) - the image used for registration
  • Annotations - the atlas labels

If you downsampled additional channels, these will also be loaded.

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