Drift correction 2D/3D for Napari similar to Fijis Correct 3D drift
Project description
napari-correct-drift
Napari-correct-drift brings the functionality of Fiji’s popular Correct-3D-drift macro to Napari for flexible and efficient correction of stage and sample drift common in time-lapse microscopy.
Napari-correct-drift supports drift correction for 2D/3D multi-channel data.
Example
to come soon
Test data
Napari-correct-drift contains synthetic sample data. To test it on real data download an example Arabidopsis growing root tip file.
Installation
You can install napari-correct-drift
via [pip]:
pip install napari-correct-drift
To install latest development version :
pip install git+https://github.com/sommerc/napari-correct-drift.git
Roadmap
- Basic CorrectDrift interface
- Synthetic test data
- Unit tests
- 2D/3D multi-channel support
- ROI support
- Saving and loading of drift tables
- pyGPUreg backend
- Outlier handling
- Speed optimizations
- Sphinx documentation
- How-tos
- Tutorials and Guides
Contributing
Contributions are very welcome. Tests can be run with [tox], please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the [BSD-3] license, "napari-correct-drift" is free and open source software
Project details
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