napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis
Project description
napari-cosmos-ts
napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis.
Install
- Install the
conda
package manager. Simplest is to download Miniconda and run the installer. - Create a virtual python environment named
napari-env
(or name it whatever you want) in which to install napari and this plugin. In a command shell or terminal run the following command:
conda create --name napari-env python
- Activate your virtual environment. !!! Note you will have to do this every time you open a new command shell or terminal. In a command shell or terminal run the following command:
conda activate napari-env
- Install
napari
andnapari-cosmos-ts
into your virtual environment. In a command shell or terminal where you have activated your virtual environment run the following command:
pip install "napari[all]" napari-cosmos-ts
Or for the latest version of napari-cosmos-ts
:
pip install "napari[all]" napari-cosmos-ts@git+https://github.com/marcel-goldschen-ohm/napari-cosmos-ts
Run
- Activate your virtual environment (see Install, replace napari-env with the name of your environment). In a command shell or terminal run the following command:
conda activate napari-env
- Launch the
napari
viewer. In a command shell or terminal where you have activated your virtual environment run the following command:
napari
- Launch the
napari-cosmos-ts
plugin. From the napari viewerPlugins menu
, selectColocalization Single-Molecule Time Series (napari-cosmos-ts)
. This should bring up a docked widget within the viewer. Now you are good to go!
User Guide
:construction:
Project details
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