napari-imc
Imaging Mass Cytometry (IMC) file type support for napari
Load panoramas and multi-channel acquisitions co-registered within the machine's coordinate system from Fluidigm TXT/MCD files
Installation
You can install napari-imc via pip:
pip install napari-imc
Alternatively, you can install napari-imc via conda:
conda install -c conda-forge napari-imc
For example, to install napari and napari-imc in a fresh conda environment using pip:
conda create -n napari-imc python=3.9
conda activate napari-imc
pip install "napari[all]" napari-imc
Usage
Simply open your Fluidigm TXT/MCD file using napari.
Authors
Created and maintained by Jonas Windhager jonas.windhager@uzh.ch
Citation
Please cite the following paper when using napari-imc in your work:
Windhager, J., Zanotelli, V.R.T., Schulz, D. et al. An end-to-end workflow for multiplexed image processing and analysis. Nat Protoc (2023). https://doi.org/10.1038/s41596-023-00881-0
@article{Windhager2023,
author = {Windhager, Jonas and Zanotelli, Vito R.T. and Schulz, Daniel and Meyer, Lasse and Daniel, Michelle and Bodenmiller, Bernd and Eling, Nils},
title = {An end-to-end workflow for multiplexed image processing and analysis},
year = {2023},
doi = {10.1038/s41596-023-00881-0},
URL = {https://www.nature.com/articles/s41596-023-00881-0},
journal = {Nature Protocols}
}
Contributing
Changelog
License
1 maintainer
Metadata
1 maintainer
Release files for napari-imc 0.6.6
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| napari_imc-0.6.6.tar.gz | 20.7 kB | Without provenance | Details for napari_imc-0.6.6.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| napari_imc-0.6.6-py3-none-any.whl | Python 3 | none | any | Details for napari_imc-0.6.6-py3-none-any.whl |
Total release size: 46.5 kB
Release files / napari_imc-0.6.6.tar.gz
| Download URL | napari_imc-0.6.6.tar.gz |
|---|---|
| Size | 20.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/6.2.0 CPython/3.14.6
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Release files / napari_imc-0.6.6-py3-none-any.whl
| Download URL | napari_imc-0.6.6-py3-none-any.whl |
|---|---|
| Size | 25.8 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.14.6
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Security for napari-imc 0.6.6
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