A plugin to estimate chromosome sizes from karyotype images.
Project description
napari-kics
A plugin to estimate chromosome sizes from karyotype images.
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
Table of Contents
- Install
- Usage
- Example
- Citation
- Maintainer
- Contributing
- License
Install
You can install napari-kics
via pip:
git clone https://github.com/mpicbg-csbd/napari-kics.git
cd napari-kics
pip install -e .
Usage
- Launch Napari via command line (
napari
). - Activate the plugin via menu
Plugins -> napari-kics: Karyotype Widget
. - Select file via
File -> Open File
. - Follow instructions in the panel on the right.
You may use the interactive analysis plots directly via command line:
karyotype-analysis-plots
Example
- Launch Napari via command line (
napari
). - Activate the plugin via menu
Plugins -> napari-kics: Karyotype Widget
. - Select file via
File -> Open Sample -> napari-kics: sample
. - Follow instructions in the panel on the right.
Try out the interactive analysis plots directly via command line:
karyotype-analysis-plots --example
License
Distributed under the terms of the BSD-3 license, "napari-kics" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Contributing
Contributions are very welcome. Please file a pull request with your contribution.
Overview
Project details
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