Segment non-star-convex objects with StarDist by merging masks.
Project description
napari-merge-stardist-masks
Segment non-star-convex objects with StarDist by merging masks.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Run
In PowerShell, when you do not have sufficient GPU support, run napari without CUDA support, i.e.,:
$env:CUDA_VISIBLE_DEVICES=-1; napari
Installation
You can install napari-merge-stardist-masks via pip:
pip install napari-merge-stardist-masks
To install latest development version :
pip install git+https://github.com/gatoniel/napari-merge-stardist-masks.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-merge-stardist-masks" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file napari-merge-stardist-masks-0.0.1.tar.gz.
File metadata
- Download URL: napari-merge-stardist-masks-0.0.1.tar.gz
- Upload date:
- Size: 9.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.10.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 17b22f00ac5388de8e214f4e9fb3641c352b23b824190ed9f242955ab975a309 |
|
| MD5 | 9986923a6b7386525cec33ab117bff17 |
|
| BLAKE2b-256 | 688b0f2391b752a3e6b0bac753eccd3c31799bc3ba7d1054cc2161c520397e9e |
File details
Details for the file napari_merge_stardist_masks-0.0.1-py3-none-any.whl.
File metadata
- Download URL: napari_merge_stardist_masks-0.0.1-py3-none-any.whl
- Upload date:
- Size: 7.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.10.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 2ac4b1278d43c24ade8e20dbd283ca9bab40424f81a8905717062db04fcb5b9b |
|
| MD5 | ec5947a8a89d96071a9bd39230bdb778 |
|
| BLAKE2b-256 | b94071453e34653f13946920824751ea0118241b41dbaf3bda94ca8d0f5fb506 |
