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A reader for zarr backed OME-NGFF images.

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A reader for zarr backed OME-NGFF images.

This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.


You can install napari-ome-zarr via pip:

pip install napari-ome-zarr


Napari will use ome-zarr to open images that the plugin recognises as ome-zarr. The image metadata from OMERO will be used to set channel names and rendering settings in napari::

$ napari ""

# Also works with local files
$ napari 6001240.zarr

OR in python::

import napari

viewer = napari.Viewer()'')

If single zarray is passed to the plugin, it will be opened without the use of the metadata::

$ napari '/tmp/6001240.zarr/0'


Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


Distributed under the terms of the BSD-3 license, "napari-ome-zarr" is free and open source software


If you encounter any problems, please file an issue along with a detailed description.

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