A plugin for PSF simulation with aberrations
Project description
napari-psf-simulator
A plugin for the simulation of the 3D Point Spread Function of an optical systen, particularly a microscope objective.
Calculates the PSF as the squared Fourier Transform of the pupil and uses the angular spectrum to propagate the PSF in 3D.
The following aberrations are included:
- phase aberration described by a Zernike polynomials with n-m coefficients
- aberration induced by a slab, with a refractive index different from the one at the object (only scalar approximation is used, polarization not considered yet).
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-psf-simulator
via pip:
pip install napari-psf-simulator
To install latest development version :
pip install git+https://github.com/andreabassi78/napari-psf-simulator.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-psf-simulator" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
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