Segment Anything Model (SAM) in Napari
Segment anything with Meta AI's new SAM model with thi Napari plugin!
SAM is the new segmentation system from Meta AI capable of one-click segmentation of any object and now our plugin neatly integrates this into Napari.
We already extended SAMs click-based foreground separation to full click-based semantic segmentation & instance segmentation will soon follow!
| Everything mode | Click-based semantic segmentation mode | Click-based instance segmentation mode |
|---|---|---|
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SAM in Napari demo
Click to play the video
Installation
The plugin requires python>=3.8, as well as pytorch>=1.7 and torchvision>=0.8. Please follow the instructions here to install both PyTorch and TorchVision dependencies. Installing both PyTorch and TorchVision with CUDA support is strongly recommended.
You can install napari-sam via pip:
pip install git+https://github.com/facebookresearch/segment-anything.git
pip install napari-sam
To install latest development version :
pip install git+https://github.com/MIC-DKFZ/napari-sam.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the Apache Software License 2.0 license, "napari-sam" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
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