Interactive visualization of spatial omics data with napari
Project description
napari-spatialdata: interactive exploration and annotation of spatial omics data
This repository contains a napari plugin for interactively exploring and annotating SpatialData objects. napari-spatialdata
is part of the SpatialData
ecosystem. To learn more about SpatialData, please see the documentation.
Installation
You can install napari-spatialdata
via pip:
pip install napari-spatialdata
Development Version
You can install napari-spatialdata
from Github with:
pip install git+https://github.com/scverse/napari-spatialdata
Or, you can also install in editable mode after cloning the repo by:
git clone https://github.com/scverse/napari-spatialdata
cd napari-spatialdata
pip install -e .
Getting started
To learn how to use the napari-spatialdata
plugin, please see the documentation. To learn how to integrate napari-spatialdata into your analysis workflows, please see the SpatialData tutorials. In particular:
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-spatialdata" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for napari_spatialdata-0.2.6-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b8fe23868f72363ffcdb235441361328726b0ea7126a0197035207e5ebfdd3c6 |
|
MD5 | be14340e93634e8e87afb24db2008e41 |
|
BLAKE2b-256 | 23700c72d9a4a08d948de69935323862b61300fb15069811a6c0a237ef018bee |