napari-tissuumaps 0.1.0

A plugin to add compatibility with Tissuumaps

napari-tissuumaps

A plugin to add compatibility with Tissuumaps

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This plugins adds a new writer to Napari to export projects to Tissumaps. Exported projects can than be open on the browser or on a standalone GUI with FlaskTissumaps.

Installation

You can install napari-tissuumaps via pip:

pip install napari-tissuumaps

You can also install napari-tissumaps via napari:

In Napari, access the menubar, Plugins > Install/Uninstall Plugins. Search for napari-tissuumaps in the list and choose install, or type napari-tissuumaps (without backticks) in the "install by name/url, or drop file..." text area and choose install.

Usage

To export a project for Tissuumaps, access the menubar, File > Save All Layers... and choose a filename with a .tmap extension. It will create a folder containing all the necessary files for Tissuumaps.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-tissuumaps" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.