napari-tomoslice
napari-tomoslice is a tool for tomogram visualisation and annotation in napari.
annotating spheres in napari-tomoslice
napari-tomoslice is powered by napari and napari-threedee.
Features
napari-tomoslice allows you to quickly annotate
- points
- paths
- spheres
Annotations are saved in the STAR file format and can be easily manipulated in Python using starfile.
Installation
napari-tomoslice is available on PyPI.
pip install napari-tomoslice
We recommend installing into a fresh conda environment.
napari does not work well via X forwarding. If you want to use napari-tomoslice in a HPC environment please run via a virtual desktop solution.
Usage
Usage: napari-tomoslice [OPTIONS]
╭─ Options ────────────────────────────────────────────────────────────────────────────────╮
│ --tomogram-directory PATH [default: None] │
│ --file-pattern TEXT [default: *.mrc] │
│ --annotation-directory PATH [default: 2024_05_22_21:16:44] │
│ * --mode [points|paths|spheres] [required] │
│ --help Show this message and exit. │
╰──────────────────────────────────────────────────────────────────────────────────────────╯
Inspiration
napari-tomoslice is inspired by dtmslice in Dynamo.
1 maintainer
Metadata
1 maintainer
Release files for napari-tomoslice 0.2.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| napari_tomoslice-0.2.1.tar.gz | 32.0 MB | With provenance | Details for napari_tomoslice-0.2.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| napari_tomoslice-0.2.1-py3-none-any.whl | Python 3 | none | any | Details for napari_tomoslice-0.2.1-py3-none-any.whl |
Total release size: 32.0 MB
Release files / napari_tomoslice-0.2.1.tar.gz
| Download URL | napari_tomoslice-0.2.1.tar.gz |
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| Size | 32.0 MB |
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| Size | 27.6 kB |
| Tags | Python 3 |
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Signed by GitHub Actions, verified by PyPI on May 20, 2025.
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