Plugin to do trackpy particle tracking on microscopy data within napari
Project description
napari-trackpy
Plugin to do trackpy particle tracking on 3D microscopy data within napari. Currently only tracking of XYZ data is implemented.
Installation
You can install napari-trackpy
via pip:
pip install napari-trackpy
To install latest development version :
pip install git+https://github.com/rhoitink/napari-trackpy.git
How to use this plugin?
- Load your XYZ data (using napari-aicsimageio)
- Make sure to split channels into different layers, such that the layer only contains 3D (XYZ) data
- Open the widget for the tracking plugin via
Plugins
>XYZ particle tracking
- Optimize the tracking settings for your dataset, for an extensive description of the settings, visit this tutorial
- Save your tracking data into the
.xyz
file format usingCtrl
+S
(on the points layer) or via the menuFile
>Save Selected Layer(s)...
Contributing
Contributions are very welcome. Tests can be run with tox.
License
Distributed under the terms of the MIT license, "napari-trackpy" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
napari-trackpy-0.2.0.tar.gz
(12.1 kB
view hashes)
Built Distribution
Close
Hashes for napari_trackpy-0.2.0-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ddea5fda2b49153db045d016c113b0de37e0b850a030adf92f8d35adfcf7ff71 |
|
MD5 | 6af6afb559e611d8e5fcee22338df74e |
|
BLAKE2b-256 | e187c678bbc367345cb7dd5c380fc1d9b27b2947cd089786d3311751eb5b6fdf |