A plugin to read whole slide images within napari.
Project description
napari-wsi
A plugin to read whole slide images within napari.
Installation
You can install napari-wsi via pip:
pip install napari-wsi
To install the latest development version, run:
pip install git+https://github.com/AstraZeneca/napari-wsi.git
Description
This napari plugin provides a reader for various whole slide image formats.
By default, any of the following formats is read using the tifffile library.
If the image file contains a tag GDAL_METADATA, the rasterio library is used
instead.
- .bif
- .ndpi
- .qptiff
- .scn
- .svs
- .tif
- .tiff
Quickstart
From the terminal:
napari CMU-1.svs
From python:
import napari
viewer = napari.Viewer()
viewer.open("CMU-1.svs")
Download files
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Source Distribution
napari_wsi-0.1.4.tar.gz
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