A plugin to read whole slide images within napari.
Project description
napari-wsi
A plugin to read whole slide images within napari.
Installation
You can install napari-wsi
via pip:
pip install napari-wsi
To install the latest development version, run:
pip install git+https://github.com/AstraZeneca/napari-wsi.git
Description
This napari plugin provides a reader for various whole slide image formats.
By default, any of the following formats is read using the tifffile library.
If the image file contains a tag GDAL_METADATA
, the rasterio library is used
instead.
- .bif
- .ndpi
- .qptiff
- .scn
- .svs
- .tif
- .tiff
Quickstart
From the terminal:
napari CMU-1.svs
From python:
import napari
viewer = napari.Viewer()
viewer.open("CMU-1.svs")
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
napari_wsi-0.1.4.tar.gz
(12.3 kB
view hashes)
Built Distribution
napari_wsi-0.1.4-py3-none-any.whl
(14.5 kB
view hashes)
Close
Hashes for napari_wsi-0.1.4-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | e5ec2c9e1d00be736a515e442a7f39d5d81c24ba3d77305c6e7754f098efe7a4 |
|
MD5 | 0f419730b467ded3717fd0141c1cc617 |
|
BLAKE2b-256 | cc50f91cc45048b90612c6cba581749d9b67dee265b83176436f1f326c8f9207 |