napari-wsi 0.1.1

A plugin to read whole slide images within napari.

napari-wsi

A plugin to read whole slide images within napari.

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Installation

You can install napari-wsi via pip:

pip install napari-wsi

To install the latest development version, run:

pip install git+https://github.com/AstraZeneca/napari-wsi.git

Description

This napari plugin provides a reader for various whole slide image formats.

By default, any of the following formats is read using the tifffile library. If the image file contains a tag GDAL_METADATA, the rasterio library is used instead.

• .bif
• .ndpi
• .qptiff
• .scn
• .svs
• .tif
• .tiff

Quickstart

From the terminal:

napari CMU-1.svs

From python:

import napari

viewer = napari.Viewer()
viewer.open("CMU-1.svs")