Neuron Analysis and Visualization library
Project description
NAVis is a Python 3 library for analysis and visualization of neuron morphology.
Features include:
work with various neuron types: skeletons, meshes, dotprops
2D (matplotlib) and 3D (vispy or plotly) plotting
virtual neuron surgery: cutting, stitching, pruning, rerooting, etc
analyze morphology (e.g. NBLAST) and connectivity
transform neurons between template brains
load neurons directly from neuPrint and neuromorpho.org
interface with Blender 3D
interface with R neuron libraries (e.g. nat, nat.nblast and elmr)
import-export from/to SWC
designed to be extensible - see for example pymaid
Check out the Documentation.
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