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Analysis kit for large-scale structure datasets, the massively parallel way

Project Description

nbodykit is an open source project and Python package providing a set of algorithms useful in the analysis of cosmological datasets from N-body simulations and large-scale structure surveys.

Driven by the optimism regarding the abundance and availability of large-scale computing resources in the future, the development of nbodykit distinguishes itself from other similar software packages (i.e., nbodyshop, pynbody, yt, xi) by focusing on :

  • a unified treatment of simulation and observational datasets by insulating algorithms from data containers
  • reducing wall-clock time by scaling to thousands of cores
  • deployment and availability on large, super computing facilities

All algorithms are parallel and run with Message Passing Interface (MPI).

For users using the NERSC super-computers, we provide a ready-to-use tarball of nbodykit and its dependencies; see Using nbodykit on NERSC for more details.

Build Status

We perform integrated tests of the code, including all built-in algorithms, in a miniconda environment for Python 2.7 and Python 3.4.

Build Status Test Coverage PyPi

Installation

We recommend using the anaconda distribution of Python.

To obtain the dependencies and install a package on OSX or Linux, use

conda install -c bccp nbodykit

We are considering support for Windows, but this depends on the status of mpi4py.

For manual install, please refer to .travis.yml, the build section:

At NERSC, nbodykit’s master branch is built every night.

salloc -N 1

source /usr/common/contrib/bccp/nbodykit/activate.sh dev

srun -n 4 python-mpi example.py

The file, example.py can be found at https://github.com/bccp/nbodykit/blob/master/nersc/example.py

Documentation

The official documentation is hosted on ReadTheDocs at http://nbodykit.readthedocs.org/.

Release history Release notifications

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0.3.1

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0.3.0

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0.2.9

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0.2.8

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0.2.7

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0.2.6

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0.2.5

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0.2.4

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0.2.3

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0.2.2

This version
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0.2.1

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0.2.0

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0.1.11

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0.1.9

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0.1.8

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0.1.6

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0.1.5

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0.1.4

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0.1.3

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0.1.2

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0.1.1

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Filename, size & hash SHA256 hash help File type Python version Upload date
nbodykit-0.2.1.tar.gz (179.2 kB) Copy SHA256 hash SHA256 Source None Apr 27, 2017

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