Skip to main content

Set of commandline tools for NCMIR

Project description

ncmirtools

Pypi Updates https://travis-ci.org/CRBS/ncmirtools.svg?branch=master https://coveralls.io/repos/github/CRBS/ncmirtools/badge.svg?branch=master Code issues

Set of commandline tools for interaction with data hosted internally at NCMIR.

For more information please visit our wiki page:

https://github.com/CRBS/ncmirtools/wiki

Tools

  • mpidir.py – Given a Microscopy product id, this script finds the path on the filesystem
  • projectdir.py – Given a project id, this script finds the path on the filesystem
  • projectsearch.py – Allows caller to search database for projects
  • mpidinfo.py – Queries database and returns information on specific Microscopy Product
  • imagetokiosk.py – Transfers second youngest image file to remote server via scp
  • ncmirtool.py – New tool that will soon be the main entry point for all commands above. Currently offers prototype uploading of data to Cell Image Library (CIL)

Compatibility

  • Should work on Python 2.7, 3.3, 3.4, & 3.5 on Linux distributions

Installation

Try one of these:

pip install ncmirtools

python setup.py install

License

See LICENSE.txt

Bugs

Please report them here

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.5.2 (2018-04-02)

  • Another fix for Issue #18 where the path output to standard out had incorrect path delimiter output.

0.5.1 (2018-04-02)

  • Set delimiter for uploads to / to deal with problem uploading files from windows machine. Issue #18

0.5.0 (2018-03-28)

  • Created prototype cilupload tool. Accessible via ncmirtool.py cilupload Issue #17
  • Created ncmirtool.py to prototype a single command line script entry point. Issue #13
  • Dropped support for Python 2.6

0.4.0 (2017-06-28)

  • Added imagetokiosk.py which transfers second youngest image file to remote server via scp. Issue #16
  • Fixed a couple minor issues so this tool will work on Windows. Issue #14

0.3.0 (2017-01-13)

  • Added mpidinfo.py script to provide information about Microscopy Product from database. Issue #6
  • Fixed bug in mpidinfo.py where passing id greater then 2^31 -1 resulted in uncaught ProgrammingException Issue #9
  • Consolidated all _setup_logging() calls into one function in config.py. Issue #8
  • Modified NcmirToolsConfig to look for configuration file in /etc/ncmirtools.conf as well as the users home directory Issue #7

0.2.0 (2016-11-8)

  • Added projectdir.py script which finds directories for a given project id. Issue #3
  • Added projectsearch.py script which given a string will search a postgres database for projects with that string in the name or description.

0.1.1 (2016-10-14)

  • Minor improvements to README.rst for better presentation on pypi

0.1.0 (2016-10-04)

  • Initial release with single script mpidir.py

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
ncmirtools-0.5.2-py2.py3-none-any.whl (44.0 kB) Copy SHA256 hash SHA256 Wheel py2.py3 Apr 3, 2018
ncmirtools-0.5.2.tar.gz (43.3 kB) Copy SHA256 hash SHA256 Source None Apr 3, 2018

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page