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Set of commandline tools for NCMIR

Project Description


Set of commandline tools for interaction with data hosted internally at NCMIR.

For more information please visit our wiki page:


  • – Given a Microscopy product id, this script finds the path on the filesystem
  • – Given a project id, this script finds the path on the filesystem
  • – Allows caller to search database for projects
  • – Queries database and returns information on specific Microscopy Product
  • – Transfers second youngest image file to remote server via scp


  • Should work on Python 2.6, 2.7, 3.3, 3.4, & 3.5 on Linux distributions


Try one of these:

pip install ncmirtools

python install




Please report them here


This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.


0.4.0 (2017-06-28)

  • Added which transfers second youngest image file to remote server via scp. Issue #16
  • Fixed a couple minor issues so this tool will work on Windows. Issue #14

0.3.0 (2017-01-13)

  • Added script to provide information about Microscopy Product from database. Issue #6
  • Fixed bug in where passing id greater then 2^31 -1 resulted in uncaught ProgrammingException Issue #9
  • Consolidated all _setup_logging() calls into one function in Issue #8
  • Modified NcmirToolsConfig to look for configuration file in /etc/ncmirtools.conf as well as the users home directory Issue #7

0.2.0 (2016-11-8)

  • Added script which finds directories for a given project id. Issue #3
  • Added script which given a string will search a postgres database for projects with that string in the name or description.

0.1.1 (2016-10-14)

  • Minor improvements to README.rst for better presentation on pypi

0.1.0 (2016-10-04)

  • Initial release with single script

Release History

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Filename, Size & Hash SHA256 Hash Help File Type Python Version Upload Date
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Wheel py2.py3 Jun 29, 2017
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Source None Jun 29, 2017

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