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Set of commandline tools for NCMIR

Project description

ncmirtools

Pypi Updates https://travis-ci.org/CRBS/ncmirtools.svg?branch=master https://coveralls.io/repos/github/CRBS/ncmirtools/badge.svg?branch=master Code issues

Set of commandline tools for interaction with data hosted internally at NCMIR.

For more information please visit our wiki page:

https://github.com/CRBS/ncmirtools/wiki

Tools

  • mpidir.py – Given a Microscopy product id, this script finds the path on the filesystem

  • projectdir.py – Given a project id, this script finds the path on the filesystem

  • projectsearch.py – Allows caller to search database for projects

  • mpidinfo.py – Queries database and returns information on specific Microscopy Product

  • imagetokiosk.py – Transfers second youngest image file to remote server via scp

Dependencies

Compatibility

  • Should work on Python 2.6, 2.7, 3.3, 3.4, & 3.5 on Linux distributions

Installation

Try one of these:

pip install ncmirtools

python setup.py install

License

See LICENSE.txt

Bugs

Please report them here

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.4.0 (2017-06-28)

  • Added imagetokiosk.py which transfers second youngest image file to remote server via scp. Issue #16

  • Fixed a couple minor issues so this tool will work on Windows. Issue #14

0.3.0 (2017-01-13)

  • Added mpidinfo.py script to provide information about Microscopy Product from database. Issue #6

  • Fixed bug in mpidinfo.py where passing id greater then 2^31 -1 resulted in uncaught ProgrammingException Issue #9

  • Consolidated all _setup_logging() calls into one function in config.py. Issue #8

  • Modified NcmirToolsConfig to look for configuration file in /etc/ncmirtools.conf as well as the users home directory Issue #7

0.2.0 (2016-11-8)

  • Added projectdir.py script which finds directories for a given project id. Issue #3

  • Added projectsearch.py script which given a string will search a postgres database for projects with that string in the name or description.

0.1.1 (2016-10-14)

  • Minor improvements to README.rst for better presentation on pypi

0.1.0 (2016-10-04)

  • Initial release with single script mpidir.py

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