Command line exporters written in Python used by the NDex REST service
Project description
ndex-webapp-python-exporters
Command line exporters written in Python used by the NDex REST service.
Supported Exporters
Tools
ndex_exporters.py Takes file in NDex CX format and converts to format specified as a command line argument
Dependencies
Compatibility
Python 3.5+
Installation
pip install ndex_webapp_python_exporters
Or directly from repo (requires git)
git clone https://github.com/ndexbio/ndex_webapp_python_exporters.git cd ndex_webapp_python_exporters python setup.py install
Example usage
The example below assumes foo.cx is a file in NDex CX format
cat foo.cx | ndex_exporters.py graphml > foo.graphml
NOTE: For the above example, the network Thyroid Cancer can be downloaded as a file named foo.cx in NDex CX format.
Credits
Graphml exporter derived from code developed by Cecilia Zhang
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2018-11-29)
First release on PyPI.
Project details
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