Extract arbitrary n-dimensional regions from ndarrays.
NDPatch is the package for extracting arbitrary regions from an N-dimensional numpy array assuming it mirrored infinitely.
The easiest way to install the latest version is by using pip:
$ pip install ndpatch
You may also use Git to clone the repository and install it manually:
$ git clone https://github.com/ashkarin/ndpatch.git $ cd ndpatch $ python setup.py install
To take a patch from the array:
import numpy as np import ndpatch array = np.arange(25).reshape((5,5)) index = (1, 2) shape = (3, 3) patch = ndpatch.get_ndpatch(array, shape, index) # patch = # [[ 7, 8, 9], # [12, 13, 14], # [17, 18, 19]]
To take get a random patch index:
import numpy as np import ndpatch array_shape = (5, 5) index = ndpatch.get_random_patch_index(array_shape)
To extract random patches from the array:
import numpy as np import ndpatch npatches = 10 patch_shape = (3, 3) array = np.arange(100).reshape((10,10)) patches = [ndpatch.get_random_ndpatch(array, patch_shape) for _ in range(npatches)]
To split the 3D array on set of overlapping 3D patches and rebuild it back:
import numpy as np import ndpatch array = np.arange(0, 125).reshape((5,5,5)) patch_shape = (4, 3, 3) overlap = 2 indices = ndpatch.get_patches_indices(array.shape, patch_shape, overlap) patches = [ndpatch.get_ndpatch(array, patch_shape, index) for index in indices] reconstructed = ndpatch.reconstruct_from_patches(patches, indices, array.shape, default_value=0) # Validate equal = (reconstructed == array) assert (np.all(equal))
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