Usage:
>>> import nebfa >>> rec = nebfa.parse(open("./test/data/basic.fa")).next() >>> rec.id ('gi', '0120123123') >>> rec.desc 'Some stuff' >>> rec.sequence 'ACGT' >>> rec.hash '2108994E17F6CCA9FF2352ADA92B6511DB076034'# Alternatively, parse_file avoids the need for a call to open. >>> for rec in nebfa.parse_file(“./test/data/multi.fa”): … print rec.id (‘gi’, ‘0120123123’) (‘ref’, ‘YP_234234.2’)
Records also have a meta attribute that has two keys for identifiers and descriptions. You will need to consult that member when you have Ctl-A separated deflines. If you have a better syntax suggestion please send a note along.
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Release files for nebfa 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| nebfa-0.0.2.tar.gz | 9.4 kB | Details |
Release files / nebfa-0.0.2.tar.gz
| Download URL | nebfa-0.0.2.tar.gz |
|---|---|
| Size | 9.4 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
3738b8174d895ca1f4dbde7e1e765bd6b743a0d2b8ea91c9bbca393333bb101a
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