Skip to main content

Annotation histories from Genbank files.

Project description


Tools for building annotation histories from multiple Genbank files.


$ mkdir gbhist $ neb-rev-fetch -d gbhist NC_008512 $ neb-gbhist -d gbhist | neb-diff-apply NC_008512.git $ git –git-dir=NC_008512.git gc –aggressive $ neb-validate-history -p NC_008512.git -g gbhist/2009-04-29-04-04.gbk

Playing with files

If you clone the pack repository after building you can poke around at the contents on the file system. For larger genomes with lots of edits this may run afoul of directory entry limits until I rewrite the object storage. For the Carsonella (NC_008512) example I use there isn’t an issue.

$ git clone NC_008512.git $ cd NC_008512 $ ls -1 files

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for nebgbhist, version 0.0.2
Filename, size File type Python version Upload date Hashes
Filename, size nebgbhist-0.0.2.tar.gz (9.2 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page