Skip to main content

comprehensive neoepitope prediction software

Project description

neoepiscope is software for predicting neoepitopes from DNA sequencing (DNA-seq) data. Where most neoepitope prediction software confines attention to neoepitopes arising from at most one somatic mutation, often just an SNV, neoepiscope uses assembled haplotype output of HapCUT2 (Edge et al., 2017) to also enumerate neoepitopes arising from more than one somatic mutation. neoepiscope also takes into account frameshifting from indels and permits personalizing the reference transcriptome using germline variants.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for neoepiscope, version 0.3.9
Filename, size File type Python version Upload date Hashes
Filename, size neoepiscope-0.3.9-py3-none-any.whl (25.0 MB) File type Wheel Python version py3 Upload date Hashes View
Filename, size neoepiscope-0.3.9.tar.gz (25.1 MB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page