comprehensive neoepitope prediction software
Project description
neoepiscope is software for predicting neoepitopes from DNA sequencing (DNA-seq) data. Where most neoepitope prediction software confines attention to neoepitopes arising from at most one somatic mutation, often just an SNV, neoepiscope uses assembled haplotype output of HapCUT2 (Edge et al., 2017) to also enumerate neoepitopes arising from more than one somatic mutation. neoepiscope also takes into account frameshifting from indels and permits personalizing the reference transcriptome using germline variants.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
No source distribution files available for this release.See tutorial on generating distribution archives.
Built Distribution
neoepiscope-0.3.1-py3-none-any.whl
(138.8 kB
view hashes)
Close
Hashes for neoepiscope-0.3.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | c3ef199ced1ebc76a603970b1dc24124f82e130dcd3d639fb1857289011577b7 |
|
MD5 | 07358d0cf7ee13ee0efd70d5d47b83e6 |
|
BLAKE2b-256 | 0c9a116f487b911c68feee05aff085141cd055ce942f7a85777e1f5723b537c7 |