netclop 1.0.2

Network clustering operations for geophysical fluid transport

netclop

NETwork CLustering OPerations for geophysical fluid transport.

netclop is a command-line interface for constructing network models of geophysical fluid transport and performing associated clustering operations (e.g., community detection and significance clustering).

Features

• Binning of Lagrangian particle simulations using H3
• Network construction of fluid transport
• Community detection using Infomap
• Network resampling and significance clustering
• Node centrality calculation
• Spatially-embedded network visualization

About

netclop was created to facilitate network-theoretic analysis of marine connectivity in support of larval ecology. Developed at the Department of Engineering Mathematics and Internetworking, Dalhousie University by Karsten N. Economou.

Usage

Particle trajectories should be decomposed into initial and final positions in the .csv form and specified with --input-data lpt

initial_latitude,initial_longitude,final_latitude,final_longitude

Networks are given in the form of a weighted edgelist .csv with --input-data net

source_node,target_node,weight