nett-benchmarks 0.4.0

A testbed for comparing the learning abilities of newborn animals and autonomous artificial agents.

Newborn Embodied Turing Test

Benchmarking Virtual Agents in Controlled-Rearing Conditions

Getting Started • Documentation • Lab Website

The Newborn Embodied Turing Test (NETT) is a cutting-edge toolkit designed to simulate virtual agents in controlled-rearing conditions. This innovative platform enables researchers to create, simulate, and analyze virtual agents, facilitating direct comparisons with real chicks as documented by the Building a Mind Lab. Our comprehensive suite includes all necessary components for the simulation and analysis of embodied models, closely replicating laboratory conditions.

Below is a visual representation of our experimental setup, showcasing the infrastructure for the three primary experiments discussed in this documentation.

How to Use this Repository

The NETT toolkit comprises three key components:

1. Virtual Environment: A dynamic environment that serves as the habitat for virtual agents.
2. Experimental Simulation Programs: Tools to initiate and conduct experiments within the virtual world.
3. Data Visualization Programs: Utilities for analyzing and visualizing experiment outcomes.

Directory Structure

The directory structure of the code is as follows:

├── docs                          # Documentation and guides
├── examples
│   ├── notebooks                 # Jupyter Notebooks for examples
│      └── Getting Started.ipynb  # Introduction and setup notebook
│   └── run                       # Terminal script example
├── src/nett
│   ├── analysis                  # Analysis scripts
│   ├── body                      # Agent body configurations
│   ├── brain                     # Neural network models and learning algorithms
│   ├── environment               # Simulation environments
│   ├── utils                     # Utility functions
│   ├── nett.py                   # Main library script
│   └── __init__.py               # Package initialization
├── tests                         # Unit tests
├── mkdocs.yml                    # MkDocs configuration
├── pyproject.toml                # Project metadata
└── README.md                     # This README file

Getting Started

To begin benchmarking your first embodied agent with NETT, please be aware:

Important: The mlagents==1.0.0 dependency is incompatible with Apple Silicon (M1, M2, etc.) chips. Please utilize an alternate device to execute this codebase.

Installation

1. Virtual Environment Setup (Highly Recommended)

   Create and activate a virtual environment to avoid dependency conflicts.

   conda create -y -n nett_env python=3.10.12
   conda activate nett_env
   

   See here for detailed instructions.

2. Install Prerequistes

   Install the needed versions of setuptools and pip:

   pip install setuptools==65.5.0 pip==21 wheel==0.38.4
   

   NOTE: This is a result of incompatibilities with the subdependency gym==0.21. More information about this issue can be found here

3. Toolkit Installation

   Install the toolkit using pip.

   pip install nett-benchmarks
   

   NOTE:: Installation outside a virtual environment may fail due to conflicting dependencies. Ensure compatibility, especially with gym==0.21 and numpy<=1.21.2.

Running a NETT

1. Download or Create the Unity Executable

   Obtain a pre-made Unity executable from here. The executable is required to run the virtual environment.

2. Import NETT Components

   Start by importing the NETT framework components - Brain, Body, and Environment, alongside the main NETT class.

   from nett import Brain, Body, Environment
   from nett import NETT
   

3. Component Configuration:

• Brain

  Configure the learning aspects, including the policy network (e.g. "CnnPolicy"), learning algorithm (e.g. "PPO"), the reward function, and the encoder.

  brain = Brain(policy="CnnPolicy", algorithm="PPO")
  

  To get a list of all available policies, algorithms, and encoders, run nett.list_policies(), nett.list_algorithms(), and nett.list_encoders() respectively.

• Body

  Set up the agent's physical interface with the environment. It's possible to apply gym.Wrappers for data preprocessing.

  body = Body(type="basic", dvs=False, wrappers=None)
  

  Here, we do not pass any wrappers, letting information from the environment reach the brain "as is". Alternative body types (e.g. two-eyed, rag-doll) are planned in future updates.

• Environment

  Create the simulation environment using the path to your Unity executable (see Step 1).

  environment = Environment(config="identityandview", executable_path="path/to/executable.x86_64")
  

  To get a list of all available configurations, run nett.list_configs().

4. Run the Benchmarking

   Integrate all components into a NETT instance to facilitate experiment execution.

   benchmarks = NETT(brain=brain, body=body, environment=environment)
   

   The NETT instance has a .run() method that initiates the benchmarking process. The method accepts parameters such as the number of brains, training/testing episodes, and the output directory.

   job_sheet = benchmarks.run(output_dir="path/to/run/output/directory/", num_brains=5, trains_eps=10, test_eps=5)
   

   The run function is asynchronous, returning the list of jobs that may or may not be complete. If you wish to display the Unity environments running, set the batch_mode parameter to False.

5. Check Status:

To see the status of the benchmark processes, use the .status() method:

benchmarks.status(job_sheet)

Running Standard Analysis

After running the experiments, the pipeline will generate a collection of datafiles in the defined output directory.

1. Install R and dependencies

   To run the analyses performed in previous experiments,this toolkit provides a set of analysis scripts. Prior to running them, you will need R and the packages tidyverse, argparse, and scales installed. To install these packages, run the following command in R:

   install.packages(c("tidyverse", "argparse", "scales"))
   

   Alternatively, if you are having difficulty installing R on your system, you can install these using conda.

   conda install -y r r-tidyverse r-argparse r-scales
   

2. Run the Analysis

   To run the analysis, use the analyze method of the NETT class. This method will generate a set of plots and tables based on the datafiles in the output directory.

   benchmarks.analyze(run_dir="path/to/run/output/directory/", output_dir="path/to/analysis/output/directory/")
   

Documentation

For a link to the full documentation, please visit here.

Experiment Configuration

More information related to details on the experiment can be found on following pages.

• Parsing Experiment
• ViewPoint Experiment

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