networkx-algo-common-subtree

A networkx implemention of algorithms to find common ordered subtree minors and isomorphisms

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Project description

Networkx algorithms for maximum common ordered subtree minors (or embedding) and maximum common subtree isomorphism. Contains pure python and cython optimized versions.

At its core the maximum_common_ordered_subtree_embedding function is an implementation of:

Lozano, Antoni, and Gabriel Valiente.
    "On the maximum common embedded subtree problem for ordered trees."
    String Algorithmics (2004): 155-170.
    https://pdfs.semanticscholar.org/0b6e/061af02353f7d9b887f9a378be70be64d165.pdf

And maximum_common_ordered_subtree_isomorphism is a variant of the above algorithm that returns common subtree ismorphism instead of subtree minors.

Standalone versions of code were originally submitted as PRs to networkx proper:

https://github.com/networkx/networkx/pull/4350 https://github.com/networkx/networkx/pull/4327

These algorithms are components of algorithms in torch_liberator, see related information:

TorchLiberator	https://gitlab.kitware.com/computer-vision/torch_liberator
Torch Hackathon 2021	Youtube Video and Google Slides

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This version

0.2.1

Apr 28, 2024

0.2.0

Sep 16, 2022

0.1.0

Jul 9, 2022

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Algorithm	Hash digest
SHA256	`a4e59660611e119f85f285bb3f8613e28f99dd8738ca87c7f91e7efee187b9a7`
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Algorithm	Hash digest
SHA256	`01b475cdc64471cba93402f300f8126541aee562a37350ab31a433968cb4ec74`
MD5	`9b815323020d3ab03ebaa3bc6d1219b2`
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Algorithm	Hash digest
SHA256	`d894baec9f54cf8ac71bcc621fb4d53ca4cb8da383c41af9efc780a479bdb778`
MD5	`b062cfac0823654d3990c0a734049c7e`
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Algorithm	Hash digest
SHA256	`defcc41d720623a79054589e9073d9703aefa3a7f86d8ad53ec9ccd531daab93`
MD5	`04192722b88adc8b6ff504bd1f6c3a09`
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Algorithm	Hash digest
SHA256	`06db405ea2a09625d96c473e197ce56ae8f69b87e11a334044cdf4206ff2a5fe`
MD5	`cbb79d6402a2f90aceb67b53abb0b32d`
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Algorithm	Hash digest
SHA256	`577f94db733bf3303446a5b5ed53f9eb101739eb4f46f857f42ae3fd8dfc0d83`
MD5	`4492c8cccff4edf27ab02885df689b75`
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Algorithm	Hash digest
SHA256	`294bb18122b704751942988c03c49d0b6d1b0acd5e66e9222e2de8c119537928`
MD5	`f076c1974c67878c580aa14caf7e1f1d`
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Algorithm	Hash digest
SHA256	`704b4016224a4023cf1e5a2e0145f9c79a046d9b198e95fab7b83c047793309a`
MD5	`aac88fc990504173cfeb8444a25110b2`
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Algorithm	Hash digest
SHA256	`ad24a37bb0fae19fd66e0109c34adf8c69ed9a1dbb08ae246eaa7faf9711e052`
MD5	`ba22b5df2d1509262dc578ad8730a57c`
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Algorithm	Hash digest
SHA256	`2ba0871fdd84fdff261485242f522d0f70d8c4b70229700ae01759f155d22c51`
MD5	`791e0196113a420bb089071429dc9ff7`
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Algorithm	Hash digest
SHA256	`d2b3d91eaa254c50c217615d6c7e43eea686d471ab5c2939920f9d53d2e49224`
MD5	`9770e10510566856ef020c3814ad6ebd`
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Algorithm	Hash digest
SHA256	`a3be316f7201ec6f97c8e9cf42a6db38207046f658fc4c4ac51f96b2d491427e`
MD5	`5c7e21fa050f27dd51558e084a801591`
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Algorithm	Hash digest
SHA256	`9384f79fc707b0af951fc579a6e4a6c8544dc4a3d8176d00b47b10a11734cc37`
MD5	`db19a7e14b39ea0d328d611249026c4b`
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Algorithm	Hash digest
SHA256	`01f43759adbb4fb8a780ede78c0e63d81f1003ba68329e67f93bbd3ca2235f1a`
MD5	`bc7fe2cf483ac16aa4f9d7a9ed29aaba`
BLAKE2b-256	`9a2a9f2f9fd2a4b86011e1f71196bd1ee5b6be198a8ec1ce93ee88b58d18be3f`

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Algorithm	Hash digest
SHA256	`d37a8d525a3aa238e6050b2da67444d5f922cabb29cd71dce3ee5dc180b0afd2`
MD5	`44a5f9165c4bcb52c05b59ecb77b7004`
BLAKE2b-256	`6c4eb58d87311a410b9885fee1db4c1de0b16103e873e8286bb2c915f59f3f46`

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Algorithm	Hash digest
SHA256	`4edf6dadda669875b9426b980f090dd7e12b7edcc49481bb3c8a42d6a6099329`
MD5	`578b7828da3a5d8388590c557cc752c8`
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Algorithm	Hash digest
SHA256	`a483561a2a264c92f0915f43cfa970a9fe23676ff96211ee9b99d95d0a183027`
MD5	`f2fc188f516ba976f32401917547a298`
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Algorithm	Hash digest
SHA256	`d4ce0001277de61c503eaa8295530946959e09b9b86fd4290561b54f8c571f3c`
MD5	`d7b63c2d0b7f4de42c652bb7ccd77693`
BLAKE2b-256	`d408eea8e0d3b286c45de2254adbe87c2a56c69f930692c12d595dfac9fe39c9`

Hashes for networkx_algo_common_subtree-0.2.1-cp310-cp310-macosx_11_0_arm64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp310-cp310-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`4aaac1dbcdc9899d2f1a66c7f8b3aba7c1b033ba65761d0ce1f4a326110ab360`
MD5	`674017bd00e2c44392f00277dd720ef8`
BLAKE2b-256	`b5d1059a4a9221fb882065aed21a97f16be73d370af51a126ae5b9d68960e6f9`

Hashes for networkx_algo_common_subtree-0.2.1-cp310-cp310-macosx_10_9_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`09d154418a7be99262ef028d547262ea3857246eac441739874f946d8ba1857c`
MD5	`7d31089d63ca0518ef159f8fb017305c`
BLAKE2b-256	`026006feb39c234017aba7604a640fc32ef80576a996cbc016265c5d56db2b12`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-win_amd64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-win_amd64.whl
Algorithm	Hash digest
SHA256	`75a2305f71a052fc5847daceb91fa762ae8ecb6b9383848143d639d6849c5e54`
MD5	`fdb0aa2464a19033e8fb3b3fae94ec2a`
BLAKE2b-256	`766afa7b9a01f7be4506ded2c728f9322e4c4482ff3014dcebc32e72652cbe03`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-musllinux_1_1_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`0a9f0df38fb16e9596156f3c8224fdac200fafafc6fc36ea45e054da67f5af9d`
MD5	`6db558f6a7d3912a479b1d23e9f213aa`
BLAKE2b-256	`725d40e0e8360f14ef7ebdd9c8ad7db0dee95e1c05f326e23dae9c8b76c70112`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-musllinux_1_1_i686.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-musllinux_1_1_i686.whl
Algorithm	Hash digest
SHA256	`13a6a2f26a85d5fc38acf5ecc171ffbef952b1c37bbd68b9498978aeed78577c`
MD5	`75457ba4e4277aa39b4ccc6870d0a800`
BLAKE2b-256	`2c64d590bfd6684af6a146fdb745b3fb69685d14e63a0013edc107bac54cbd03`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`c519219fcee465dad38389bf3b2e1e2997d2d431eeee80249af48cda81d54161`
MD5	`74b6f31a55255f5d3773f39418b66ead`
BLAKE2b-256	`f5fa68f60ffc303eacf9d08c9c41b4adbd63e1df1a1efe141655ea1657a71e14`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm	Hash digest
SHA256	`163a37892f6eac848509af3266a6906264cd47ae4e7d3def1a44ea9f1f40b743`
MD5	`4a89522581106a0b31ca98a4f8ee6192`
BLAKE2b-256	`143eff89d298fb381a07b4cb4c314f7acd7812deaa18eb2c963a087f80b95c7c`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-macosx_11_0_arm64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`b77fc7e95b76a072288591cb49de2230b0e8253c4e106189fa91a2e2f47e65a8`
MD5	`073caf3753bda2e30ba9b98b9b58e298`
BLAKE2b-256	`d0175f0795607cb188ab9622de5d717b7fe2e00697d6cc6f1c55a078aa535a40`

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-macosx_10_9_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`1a72c86d13a57d3cd3035420a43e58773fc8cc2fa21e7d94cb215f07f43882a3`
MD5	`b21f789cf0f22c0fd33755b0c05f6c08`
BLAKE2b-256	`ce09498dc800e6072174da529ee8944534218013dfd4397c4a07d54e2cf1afb9`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-win_amd64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-win_amd64.whl
Algorithm	Hash digest
SHA256	`98e0214a97ed3baa31aa1ad3da56f06d87a13a234b18af7c2b634765c630ebd9`
MD5	`d1a76c43a6b63d1b5357faaa650e6a03`
BLAKE2b-256	`b481adb8fcebefd0ab9e110c66e8d514251bdc8132ac3b569c611da1bc36f33b`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-musllinux_1_1_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`6ba9f5bbaec163c740bc4fdf3bbed0d3f864e163eda207cd076cffad91abd3a3`
MD5	`e91544762779b0967c35506ee7ca41c0`
BLAKE2b-256	`b7d5645ac521268b0fa698b42356e0a5899e8548de28df2b98fa5c104b77db41`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-musllinux_1_1_i686.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-musllinux_1_1_i686.whl
Algorithm	Hash digest
SHA256	`efa4c284f81ad39af16a21804d50b2761a5c52ba7ce8005e64eec906223ce4dd`
MD5	`f082e61e1337e04a29bf62e6bc23ac42`
BLAKE2b-256	`15b7982f58020288eae418bda9ce2305f24236edfeec15c22822aaa7141bf0e2`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`be2c0e3da4a55c4c68761574a96fcdedf217a8b7543f61416fba4011239349e9`
MD5	`e5fa5c383687c739bbb99713fd202f67`
BLAKE2b-256	`cb1dc584f5de29a57a8558835c6422e85d9c6d0678362b55867f30189e966ac7`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm	Hash digest
SHA256	`a3c9cd1fb8dd4906b79f248aae66c1efc2b69183c61b10402aa328350e343474`
MD5	`b86a1269068527d0d5db6e24e25bf517`
BLAKE2b-256	`34e6d5fab579103e386a8c43012628cb8941cac319680b800af9549eeeffb2dc`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-macosx_11_0_arm64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`9c6a5d5a9d64e1382da176bb4d00ec25063d5cded777e91b699ea39aa9596331`
MD5	`d76225090abe755130e35add6a6c9b24`
BLAKE2b-256	`a963591b42890871b2482ecbf2e73e4358158aeb993b37e51899f21958a8a7ff`

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-macosx_10_9_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`f11704ad20b935a87e3fc8b1500952f7f0e18a0fb0e76f1b0ed0866e91722e41`
MD5	`116084d49b701e1206102c1861e1c676`
BLAKE2b-256	`4a0013420844f1b721fdc40488f5235aaf0fa3101f7ef6d1beffa3146c49af0d`

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-win_amd64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-win_amd64.whl
Algorithm	Hash digest
SHA256	`ceefaf2f1912ac826673dabe3e399f9e569fe3501c16c818afa823d40d5a67cf`
MD5	`56637d3727a5a29c2b1db7f823a82be6`
BLAKE2b-256	`f1fae72548b76883123b174712ecf90ccd5abbcfa881bc214f7894a2993aed00`

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-musllinux_1_1_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`59543d09a87a75b7d8b4466c7b67a53f4c4b6c10befa605f88d68b2fc8403666`
MD5	`2390c7a6480226d3935d955e0587cc77`
BLAKE2b-256	`e345c2b08f008af28b48bd0acb4533e2fe4370900fc57b1d7b4dac263e45d542`

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-musllinux_1_1_i686.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-musllinux_1_1_i686.whl
Algorithm	Hash digest
SHA256	`a106901df7f022a1b4494d797ab8b28aa526b1fa2fc7f971200c0ac7c7856bea`
MD5	`35ec80ac7aafc6da2639a6ea5b032114`
BLAKE2b-256	`e3544a5fdcb8ae52c7bb2f7e439777aff1a8f3cabb131743fef6c41acdb94b3c`

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`2d8170d3873e43c20b419aa959c7b34a7e3720e125b7aa2794a458f811e01c35`
MD5	`4b4bade3fcf622eb0b32f6c121c4d729`
BLAKE2b-256	`10bbcf40f853a5a5f15027680000c408fe4a773e852ec312c4c83e33fec189be`

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm	Hash digest
SHA256	`758ec684d6c362a6873e9d5681e85a4effaf4d03a766eebc49a9f9d647c1263e`
MD5	`53edee0c3d3ed673919c9c8f778c627a`
BLAKE2b-256	`af10ac8ddf7bd0cf5037a7669ab88682d04cf29651f747ca87691180373a27fd`

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-macosx_10_9_x86_64.whl

Hashes for networkx_algo_common_subtree-0.2.1-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`6bc681e5101617163d8bbaaf3f4bf1c03277db98b33a0c6b295f0435074ffab3`
MD5	`9451fa93df09097c224fd5a459d1fc0c`
BLAKE2b-256	`5d3ff51b8ae1c98a574772024634f49cd0c0506215093c81a8dda149133384bf`