Application to perform curation of neuroscientific literature.
Project description
Getting Started | Releases | Status
NeuroCurator
Desktop application to perform systematic and collaborative curation of neuroscientific literature.
This is a Graphical User Interface (GUI) for the Python package NeuroAnnotation Toolbox (NAT).
This framework has been described in details in the following open-access paper: https://doi.org/10.3389/fninf.2017.00027.
With NeuroCurator, annotations are: - traceable, - reusable across projects, - structured with controlled vocabularies.
Getting Started
Requirements:
System side:
Python side:
*Miniconda is not required. It simplifies only temporary the installation: no need to compile Qt and to install manually Python 3.4.
Installation:
Create a virtual environment with Python 3.4:
conda create -y --name nc python=3.4
Switch to the virtual environment:
source activate nc
Install PySide 1.2.4 and Qt 4.8.7 from conda-forge:
conda install -y pyside --channel conda-forge
Install NeuroCurator:
pip install nat
pip install neurocurator --no-deps
Launch NeuroCurator:
neurocurator
For the future uses: 1. enter the virtual environment: source activate nc 2. launch NeuroCurator: neurocurator 3. use NeuroCurator 4. close NeuroCurator 5. exit the virtual environment: source deactivate
Releases
Versions and their notable changes are listed in the releases section.
Status
Created during 2016.
Ongoing stabilization and reengineering in the branch refactor-architecture.
The branch refactor-architecture is not intended to be used by end-users.
New features, bug fixes and improvements are done on the reengineered code sections.
When a reengineered code section is stable, it’s merged into the branch master and a release is published.
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