Neurodocker
Neurodocker is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.
Please see our website https://www.repronim.org/neurodocker for more information.
See our list of supported software
Build status
You can check the status of the build of the Docker images for several of the neuroimaging software packages that are supported by Neurodocker on this page. This may help with identifying base images that work well for your use case.
Installation
Use the Neurodocker Docker image (recommended):
docker run --rm repronim/neurodocker:latest --help
The Docker images were moved to repronim/neurodocker from kaczmarj/neurodocker.
This project can also be installed with pip:
pip install neurodocker
neurodocker --help
If the pip install command above gives a permissions error, install as a non-root user:
pip install --user neurodocker
Note: it is not yet possible to minimize Docker containers using the Neurodocker Docker image.
Developer installation
Clone the repository and install in editable mode.
git clone https://github.com/ReproNim/neurodocker
cd neurodocker
python -m pip install --no-cache-dir --editable .[all]
Before committing changes, initialize prek with prek install, or pre-commit with pre-commit install. This will format code with each commit to keep the style consistent. Neurodocker uses ruff for formatting.
Release files for neurodocker 2.1.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| neurodocker-2.1.2.tar.gz | 81.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| neurodocker-2.1.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 157.5 kB
Release files / neurodocker-2.1.2.tar.gz
| Download URL | neurodocker-2.1.2.tar.gz |
|---|---|
| Size | 81.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
a3d32d597e6d4b6d579981f504a1f1e5eb8cb2f790f48e69a03798737db71523
|
|
BLAKE2b-256 checksum How to use checksums |
ba61d069db79ccc05feb0619d8ecc4cc40679ab47bd86a4ea0e7bcd7488334bd
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.20
|
Release files / neurodocker-2.1.2-py3-none-any.whl
| Download URL | neurodocker-2.1.2-py3-none-any.whl |
|---|---|
| Size | 76.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
3728f237b23995bc0bd018c4ac3fcc054a85bc646f549eaf0099f45cc4e126a0
|
|
BLAKE2b-256 checksum How to use checksums |
1402a709fad52179ca8fc4d807c76da379417279f7a99bf66c9e3d0e0c8d059f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.20
|
