A generic generator of Dockerfiles and Singularity recipes
Neurodocker is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.
Please see our website https://www.repronim.org/neurodocker for more information.
Use the Neurodocker Docker image (recommended):
docker run --rm repronim/neurodocker:0.7.0 --help
The Docker images were moved to repronim/neurodocker from kaczmarj/neurodocker.
This project can also be installed with
pip install neurodocker neurodocker --help
pip install command above gives a permissions error, install as a non-root user:
pip install --user neurodocker
Note: it is not yet possible to minimize Docker containers using the Neurodocker Docker image.
Clone the repository and install in editable mode.
git clone https://github.com/ReproNim/neurodocker cd neurodocker python -m pip install --no-cache-dir --editable .[all]
Before committing changes, initialize
pre-commit install. This will format code with each commit to keep the style consistent. Neurodocker uses
black for formatting.
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