Conversion of images to the Neuroglancer pre-computed format
Project description
Tools for converting 3D images to the Neuroglancer pre-computed format.
Installation
The easiest way to install neuroglancer-scripts is in a virtual environment:
python3 -m venv venv/ . venv/bin/activate pip install neuroglancer-scripts
Usage
See the documentation.
Development
The code is hosted on GitHub.
This project uses pytest and tox for testing. You will need to install the project (a virtual environment is recommended) before you can use it or run the tests. pip install -e will install in editable mode, so you do not need to re-install when changing existing files. The [dev] suffix pulls extra dependencies that are useful for development.
git clone https://github.com/HumanBrainProject/neuroglancer-scripts.git cd neuroglancer-scripts python3 -m venv venv/ . venv/bin/activate pip install -e .[dev] pytest --cov=neuroglancer_scripts --cov-report=html --cov-report=term
It is advised to use tox for testing the code against all supported Python versions. This will run the same tests as the Travis continuous integration:
tox
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