Skip to main content
Join the official 2019 Python Developers SurveyStart the survey!

Conversion of images to the Neuroglancer pre-computed format

Project description

Tools for converting 3D images to the Neuroglancer pre-computed format.

PyPI Version Build Status Coverage Status Documentation Status

Installation

The easiest way to install neuroglancer-scripts is in a virtual environment:

python3 -m venv venv/
. venv/bin/activate
pip install neuroglancer-scripts

Usage

See the documentation.

Development

The code is hosted on GitHub.

This project uses pytest and tox for testing. You will need to install the project (a virtual environment is recommended) before you can use it or run the tests. pip install -e will install in editable mode, so you do not need to re-install when changing existing files. The [dev] suffix pulls extra dependencies that are useful for development.

git clone https://github.com/HumanBrainProject/neuroglancer-scripts.git
cd neuroglancer-scripts
python3 -m venv venv/
. venv/bin/activate
pip install -e .[dev]

pytest --cov=neuroglancer_scripts --cov-report=html --cov-report=term

It is advised to use tox for testing the code against all supported Python versions. This will run the same tests as the Travis continuous integration:

tox

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for neuroglancer-scripts, version 0.3.0
Filename, size File type Python version Upload date Hashes
Filename, size neuroglancer_scripts-0.3.0-py3-none-any.whl (55.7 kB) File type Wheel Python version py3 Upload date Hashes View hashes
Filename, size neuroglancer-scripts-0.3.0.tar.gz (58.7 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page