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Conversion of images to the Neuroglancer pre-computed format

Project description


Tools for converting volumetric images and surface meshes to the pre-computed format of Neuroglancer.

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The easiest way to install the latest stable version of neuroglancer-scripts is through pip. Using a virtual environment is recommended:

python3 -m venv venv/
. venv/bin/activate
pip install neuroglancer-scripts


See the documentation.


The code is hosted on

Useful commands for development:

git clone

# Install in a virtual environment
cd neuroglancer-scripts
python3 -m venv venv/
. venv/bin/activate
pip install -e .[dev]

# Tests
pytest  # run tests
pytest --cov=neuroglancer_scripts --cov-report=html  # detailed test coverage report
tox  # run tests under all supported Python versions

# Please install pre-commit if you intend to contribute
pre-commit install  # install the pre-commit hook


This repository uses pre-commit to ensure that all committed code follows minimal quality standards. Please install it and configure it to run as a pre-commit hook in your local repository (see above).

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