neuroglancer-scripts 0.1.0

Conversion of images to the Neuroglancer pre-computed format

Tools for converting 3D images to the Neuroglancer pre-computed format.

Installation

The easiest way to install neuroglancer-scripts is in a virtual environment:

python3 -m venv venv/
. venv/bin/activate
pip install neuroglancer-scripts

Usage

See the documentation.

Development

The code is hosted on GitHub.

This project uses pytest and tox for testing. You will need to install the project (a virtual environment is recommended) before you can use it or run the tests. pip install -e will install in editable mode, so you do not need to re-install when changing existing files. The [dev] suffix pulls extra dependencies that are useful for development.

git clone https://github.com/HumanBrainProject/neuroglancer-scripts.git
cd neuroglancer-scripts
python3 -m venv venv/
. venv/bin/activate
pip install -e .[dev]

pytest --cov=neuroglancer_scripts --cov-report=html --cov-report=term

It is advised to use tox for testing the code against all supported Python versions. This will run the same tests as the Travis continuous integration:

tox